S2 Fig - PLoS ONE

S2 Fig. (Continued)
S207, OTU 1, KR232855
Streptococcus gallolyticus subsp. gallolyticus, X94337
Streptococcus gallolyticus subsp. pasteurianus, DQ232528
Streptococcus equinus, AJ301607
S484, OTU 2, KR232910
Streptococcus anginosus, AF104678
Streptococcus massiliensis, AY769997
Streptococcus pyogenes, AB002521
S379, OTU 3, KR232880
Streptococcus agalactiae, AB023574
S418, OTU 4, KR232891
Lactococcus lactis subsp. lactis, AB100803
Lactococcus lactis subsp. hordniae, AB100804
S409, OTU 5, KR232888
Enterococcus faecium, AJ301830
Enterococcus lactis, GU983697
Enterococcus durans, AJ276354
S225, OTU 6, KR232857
Enterococcus casseliflavus, AF039903
Enterococcus gallinarum, AF039900
S330, OTU 7, KR232872
Enterococcus faecalis, AB012212
Enterococcus rivorum, FN822765
S27, OTU 8, KR232863
Lactobacillus crispatus, AF257097
Lactobacillus acidophilus, AY773947
Lactobacillus delbrueckii subsp. delbrueckii, AY773949
S421, OTU 9, KR232892
Lactobacillus jensenii, AF243176
Lactobacillus fornicalis, Y18654
S459, OTU 10, KR232900
Lactobacillus gasseri, AF519171
Lactobacillus johnsonii, AJ002515
Lactobacillus paracasei subsp. tolerans, AB181950
Lactobacillus paracasei subsp. paracasei, D79212
S39, OTU 11, KR232882
Lactobacillus rhamnosus, D16552
S41, OTU 12, KR232889
Aerococcus urinae, M77819
Aerococcus viridans, ADNT010000
S163, OTU 13, KR232849
Staphylococcus capitis subsp. capitis, L37599
Staphylococcus caprae, AB009935
S407, OTU 14, KR232886
Staphylococcus epidermidis, D83363
Staphylococcus saccharolyticus, L37602
S257, OTU 15, KR232862
Staphylococcus aureus subsp. aureus, L36472
Staphylococcus aureus subsp. anaerobius, D83355
Staphylococcus simiae, AY727530
S104, OTU 16, KR232841
Staphylococcus hominis subsp. novobiosepticus, AB233326
Staphylococcus hominis subsp. hominis, X66101
S345, OTU 17, KR232874
Staphylococcus lugdunensis, AB009941
S164, OTU 18, KR232850
Staphylococcus haemolyticus, X66100
Staphylococcus simulans, D83373
S141, OTU 19, KR232847
Bacillus clausii, X76440
Bacillus rhizosphaerae, FJ233848
S231, OTU 20, KR232859
Peptoniphilus harei, Y07839
Peptoniphilus gorbachii, DQ911241
S276, OTU 21, KR232864
S481, OTU 22, KR232908
Peptoniphilus olsenii, DQ911242
S467, OTU 23, KR232903
Peptoniphilus lacrimalis, AF542230
S470, OTU 24, KR232905
Peptoniphilus duerdenii, EU526290
S197, OTU 25, KR232854
S14, OTU 26, KR232846
Peptoniphilus koenoeneniae, EU526291
Peptoniphilus asaccharolyticus, AF542228
S362, OTU 27, KR232877
Peptoniphilus coxii, GU938836
Peptoniphilus ivorii, Y07840
S194, OTU 28, KR232853
Anaerococcus lactolyticus, AF542233
Anaerococcus prevotii, AF542232
S138, OTU 29, KR232845
Anaerococcus vaginalis, AF542229
S393, OTU 30, KR232883
Finegoldia magna, AF542227
Gallicola barnesae, AB038361
S370, OTU 31, KR232878
Murdochiella asaccharolytica, EU483153
S100, OTU 32, KR232840
Eubacterium callanderi, X96961
Eubacterium limosum, M59120
Bacilli
Clostridia
0.10
S2 Fig. (Continued)
S298, OTU 33, KR232865
Actinomyces neuii subsp. neuii, AM084228
Actinomyces neuii subsp. anitratus, AM084229
S398, OTU 34, KR232884
Varibaculum cambriense, AJ428402
S406, OTU 35, KR232885
S385, OTU 36, KR232881
Actinomyces europaeus, Y08828
Actinomyces bovis, X81061
S350, OTU 37, KR232876
Trueperella bernardiae, X79224
Trueperella pyogenes, X79225
S56, OTU 38, KR232919
Brevibacterium ravenspurgense, EU086793
Brevibacterium linens, X77451
S413, OTU 39, KR232890
Zimmermannella bifida, AB012595
S189, OTU 40, KR232851
Propionibacterium avidum, AJ003055
Propionibacterium propionicum, AJ003058
S34, OTU 41, KR232875
Propionibacterium acnes, AB042288
Propionibacterium freudenreichii subsp. freudenreichii, X53217
S86, OTU 42, KR232922
Propionimicrobium lymphophilum, AJ003056
S482, OTU 43, KR232909
Bifidobacterium pseudocatenulatum, D86187
Bifidobacterium catenulatum, AF432082
S494, OTU 44, KR232913
Gardnerella vaginalis, M58744
Bifidobacterium bifidum, U25952
S504, OTU 45, KR232915
Corynebacterium aurimucosum, AJ309207
Corynebacterium minutissimum, X84678
Corynebacterium diphtheriae, X84248
S32, OTU 46, KR232870
Corynebacterium coyleae, X96497
Corynebacterium pilbarense, FN295567
S13, OTU 47, KR232844
Corynebacterium amycolatum, X82057
Corynebacterium sphenisci, AJ440964
S318, OTU 48, KR232869
Eggerthella lenta, AF292375
S475, OTU 49, KR232906
Gordonibacter pamelaeae, AM886059
Adlercreutzia equolifaciens, AB306661
Asaccharobacter celatus, AB266102
S45, OTU 50, KR232898
S468, OTU 51, KR232904
Slackia exigua, AF101240
Slackia heliotrinireducens, AF101241
S305, OTU 52, KR232866
Collinsella aerofaciens, AB011816
Actinobacteria
0.10
S129, OTU 53, KR232843
Bacteroides fragilis, CR626927
S254, OTU 54, KR232861
Bacteroides nordii, AY608697
S11, OTU 55, KR232842
Bacteroides thetaiotaomicron, AE015928
Bacteroides faecis, GQ496624
S425, OTU 56, KR232893
Bacteroides ovatus, AB050108
S236, OTU 57, KR232860
S65, OTU 58, KR232920
Bacteroides caccae, X83951
Bacteroides xylanisolvens, AM230650
S427, OTU 59, KR232894
Bacteroides stercoris, X83953
S461, OTU 60, KR232901
Bacteroides uniformis, AB050110
S327, OTU 61, KR232871
Bacteroides vulgatus, AJ867050
S465, OTU 62, KR232902
Bacteroides dorei, AB242142
S229, OTU 63, KR232858
Parabacteroides distasonis, AB238922
S449, OTU 64, KR232897
S448, OTU 65, KR232896
Parabacteroides merdae, AB238928
Parabacteroides johnsonii, AB261128
S496, OTU 66, KR232914
Barnesiella intestinihominis, AB370251
S342, OTU 67, KR232873
Barnesiella viscericola, AB267809
S479, OTU 68, KR232907
Butyricimonas virosa, AB443949
Butyricimonas synergistica, AB443948
S190, OTU 69, KR232852
S90, OTU 70, KR232923
Odoribacter splanchnicus, L16496
S457, OTU 71, KR232899
Alistipes shahii, AY974072
Alistipes finegoldii, AY643083
S440, OTU 72, KR232895
Alistipes putredinis, L16497
S216, OTU 73, KR232856
Alistipes indistinctus, AB490804
Escherichia coli, X80725
Shigella dysenteriae, X96966
S83, OTU 74, KR232921
S488, OTU 75, KR232912
S53, OTU 76, KR232917
Enterobacter pulveris, DQ273684
Enterobacter cowanii, AJ508303
S306, OTU 77, KR232867
Klebsiella variicola, AJ783916
Klebsiella pneumoniae subsp. pneumoniae, X87276
S54, OTU 78, KR232918
Enterobacter asburiae, AB004744
S314, OTU 79, KR232868
Enterobacter aerogenes, AB004750
Raoultella terrigena, Y17658
Enterobacter cloacae subsp. cloacae, AJ251469
S408, OTU 80, KR232887
S487, OTU 81, KR232911
Proteus mirabilis, DQ885256
Proteus vulgaris, DQ885257
S151, OTU 82, KR232848
Burkholderia pyrrocinia, U96930
Burkholderia cepacia, U96927
Achromobacter xylosoxidans subsp. xylosoxidans, Y14908
Achromobacter denitrificans, AJ278451
S52, OTU 83, KR232916
S375, OTU 84, KR232879
Bilophila wadsworthia, AJ867049
Lawsonia intracellularis, L15739
Bacteroidia
Gammaproteobacteria
Betaproteobacteria
0.10
Deltaproteobacteria
S2 Fig. Maximum likelihood tree showing the phylogenetic relationships of the 16S rRNA gene
sequences of the isolates with the most closely related reference sequences of the LTP database
115. Tree was constructed using sequences longer than 1270 bp with a 20% conservational filter.
The scale bar infers 10 nucleotide substitutions per 100 sequenced nucleotides.